Workflow: workflow.cwl
Fetched 2025-03-04 08:32:43 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| PATH | String[] | ||
| tree | String[] | ||
| in_2bi | File | ||
| in_seq | Directory | ||
| in_check | File (Optional) | ||
| in_names | Directory | ||
| gap_lines | File | ||
| in_tracks | Directory | ||
| in_extract | File (Optional) | ||
| url_string | String | ||
| in_cds_fasta | File | ||
| in_gc_bigwig | File | ||
| original_gff | File | ||
| processed_gff | File (Optional) | ||
| in_gaps_bigwig | File (Optional) | ||
| in_genomic_gff | File | ||
| in_tracks_conf | File | ||
| url_table_file | String[] | ||
| deepPATH_bigwig | String[] | ||
| in_md5checksums | File (Optional) | ||
| in_genomic_fasta | File | ||
| in_protein_fasta | File | ||
| deepPATH_analyses | String[] | ||
| in_trackList_json | File | ||
| in_assembly_readme | File | ||
| in_transcript_fasta | File | ||
| deepPATH_apollo2_data | String[] | ||
| in_trackList_json_bak | File | ||
| deepPATH_genomic_fasta | String[] | ||
| in_genePrediction_readme | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| 2blat |
2blat/workflow.cwl
(Workflow)
|
||
| link_bigwig |
link_bigwig.cwl
(CommandLineTool)
|
||
| setup_folder |
setup_folder.cwl
(CommandLineTool)
|
creating directory tree | |
| link_analyses |
link_analyses.cwl
(CommandLineTool)
|
||
| 2other_species |
2other_species/workflow.cwl
(Workflow)
|
||
| 2working_files |
2working_files/workflow.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out_dummy | File |
Permalink:
https://w3id.org/cwl/view/git/556884e8e205295e561b1d9140d836cdd6c1d8c9/flow_dispatch/workflow.cwl
