Workflow: workflow.cwl

Fetched 2023-01-14 17:41:37 GMT
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Workflow as SVG
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  • Default Values
  • Nested Workflows
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  • Inputs/Outputs

Inputs

ID Type Title Doc
PATH String[]
tree String[]
in_2bi File
in_seq Directory
in_check File
in_names Directory
in_tracks Directory
in_extract File
in_cds_fasta File
in_gc_bigwig File
in_gaps_bigwig File
in_genomic_gff File
in_tracks_conf File
deepPATH_bigwig String[]
in_md5checksums File
in_genomic_fasta File
in_protein_fasta File[]
deepPATH_analyses String[]
in_trackList_json File
in_assembly_readme File
in_transcript_fasta File
deepPATH_apollo2_data String[]
in_trackList_json_bak File
deepPATH_genomic_fasta String[]
in_genePrediction_readme File

Steps

ID Runs Label Doc
2blat
2blat/workflow.cwl (Workflow)
link_bigwig
link_bigwig.cwl (CommandLineTool)
setup_folder
setup_folder.cwl (CommandLineTool)
creating directory tree
2other_species
2working_files

Outputs

ID Type Label Doc
out_dummy File
Permalink: https://w3id.org/cwl/view/git/3aabbb0f6635bb9354ad52f616ab7cfc61848eb6/flow_dispatch/workflow.cwl