Workflow: module-5

Fetched 2023-01-12 20:11:55 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
bams File[]
genome String
clstats1 6cae03bd229aff55a785322abbe02c4b[]
clstats2 923d6a6b0a55343750744ed6f1c4c9d3[]
fp_genotypes File
fp_intervals File
pairing_file File
request_file File
grouping_file File
bait_intervals File
project_prefix String
md_metrics_files 85edadd0a407681508ab3bff192f691c[]
target_intervals File

Steps

ID Runs Label Doc
generate_pdf
cmo-qcpdf/0.5.11/cmo-qcpdf.cwl (CommandLineTool)
cmo-qcpdf

None

scatter_metrics

Outputs

ID Type Label Doc
qc_files File[]
qual_pdf File[]
as_metrics File[]
gcbias_pdf File[]
hs_metrics File[]
insert_pdf File[]
qual_metrics File[]
doc_basecounts File[]
gcbias_metrics File[]
gcbias_summary File[]
insert_metrics File[]
per_target_coverage File[]
Permalink: https://w3id.org/cwl/view/git/e96613177b18b76c6fac98b945660bde65ebdd80/setup/cwl/module-5.cwl