- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
genome | String | ||
vep_data | String | ||
tumor_bam | File | ||
delly_type | String[] | ||
normal_bam | File | ||
tumor_sample_name | String | ||
normal_sample_name | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
index |
cmo-index/1.0.0/cmo-index.cwl
(CommandLineTool)
|
cmo-index | |
createTNPair |
module-6.cwl#createTNPair/4d122c9a-4f91-4228-9ffd-66395b1bc1f8
(CommandLineTool)
|
||
convert_vcf2maf |
cmo-vcf2maf/1.6.17/cmo-vcf2maf.cwl
(CommandLineTool)
|
cmo-vcf2maf |
None |
call_sv_by_delly | |||
merge_with_bcftools |
module-6.cwl#merge_with_bcftools/46b778dd-b2f4-4b6c-a076-ec3f89e964ec
(CommandLineTool)
|
||
portal_format_output |
portal-formatting.cli/1.0.0/format-maf.cwl
(Workflow)
|
format-maf | |
merge_with_bcftools_unfiltered |
module-6.cwl#merge_with_bcftools_unfiltered/45ccf0b1-2223-477a-b1a8-ab1ec3301f91
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
delly_sv | File[] | ||
maf_file | File | ||
merged_file | File | ||
portal_file | File | ||
delly_filtered_sv | File[] | ||
merged_file_unfiltered | File |
Permalink:
https://w3id.org/cwl/view/git/7a2864f5af7723657406e4f3e94f92db09ec90fc/setup/cwl/module-6.cwl