Workflow: conpair-master

Fetched 2023-01-20 11:10:24 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
ref File
markers File
tumor_bams File[]
file_prefix String
markers_bed File
normal_bams File[]
pairing_file File
tumor_sample_name String[]
normal_sample_name String[]

Steps

ID Runs Label Doc
pair-pileups
conpair-pileup-pairing.cwl (ExpressionTool)
conpair-pileup-pairing
run-concordance
run-merge-conpair
conpair-merge.cwl (CommandLineTool)
conpair-merge

None

run-pileups-contamination

Outputs

ID Type Label Doc
concordance_pdf File
concordance_txt File
contamination_pdf File
contamination_txt File
Permalink: https://w3id.org/cwl/view/git/45f7695e28fa2185944fd220834eeac2e27d53c7/setup/cwl/conpair/0.2/conpair-master.cwl