- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
genome | String | ||
vep_data | String | ||
tumor_bam | File | ||
delly_type | String[] | ||
normal_bam | File | ||
tumor_sample_name | String | ||
normal_sample_name | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
index |
cmo-index/1.0.0/cmo-index.cwl
(CommandLineTool)
|
cmo-index | |
createTNPair |
module-6.cwl#createTNPair/9a6bda68-b98a-43d6-b1c5-2e1f1506651b
(CommandLineTool)
|
||
convert_vcf2maf |
cmo-vcf2maf/1.6.17/cmo-vcf2maf.cwl
(CommandLineTool)
|
cmo-vcf2maf |
None |
call_sv_by_delly | |||
merge_with_bcftools |
module-6.cwl#merge_with_bcftools/a8357d9f-469b-4100-9a5e-b4b4119088c3
(CommandLineTool)
|
||
portal_format_output |
portal-formatting.cli/1.0.0/format-maf.cwl
(Workflow)
|
format-maf | |
merge_with_bcftools_unfiltered |
module-6.cwl#merge_with_bcftools_unfiltered/bd213912-ddc3-4cce-87aa-d02830e5cb14
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
delly_sv | File[] | ||
maf_file | File | ||
merged_file | File | ||
portal_file | File | ||
delly_filtered_sv | File[] | ||
merged_file_unfiltered | File |
Permalink:
https://w3id.org/cwl/view/git/425970cb18efb69b42edf26f92c07b7683a62576/setup/cwl/module-6.cwl