Workflow: conpair-master
Fetched 2024-11-24 03:39:29 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| ref | File | ||
| markers | File | ||
| tumor_bams | File[] | ||
| file_prefix | String | ||
| markers_bed | File | ||
| normal_bams | File[] | ||
| pairing_file | File | ||
| tumor_sample_name | String[] | ||
| normal_sample_name | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| pair-pileups |
conpair-pileup-pairing.cwl
(ExpressionTool)
|
conpair-pileup-pairing | |
| run-concordance | |||
| run-merge-conpair |
conpair-merge.cwl
(CommandLineTool)
|
conpair-merge |
None |
| run-pileups-contamination |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| concordance_pdf | File | ||
| concordance_txt | File | ||
| contamination_pdf | File | ||
| contamination_txt | File |
Permalink:
https://w3id.org/cwl/view/git/425970cb18efb69b42edf26f92c07b7683a62576/setup/cwl/conpair/0.2/conpair-master.cwl
