Workflow: msi_workflow.cwl

Fetched 2025-08-23 18:31:21 GMT

Workflow to run the MSI analysis on a batch of samples

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Inputs

ID Type Title Doc
pairs https://w3id.org/cwl/view/git/dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2/cwl/types.yml#MSIOutputPair[]
threads String
tumor_bam_files File[]
normal_bam_files File[]
microsatellites_file File

reference microsatellite list

Steps

ID Runs Label Doc
run_msi_add_sample_id

Outputs

ID Type Label Doc
pairs https://w3id.org/cwl/view/git/dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2/cwl/types.yml#MSIOutputPair[]
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2/cwl/msi_workflow.cwl