Workflow: maf2vcf_gz_workflow.cwl
Fetched 2023-01-09 06:36:07 GMT
Verified with cwltool version 3.1.20221201130942
Workflow to convert a maf file into a vcf.gz with .tbi index
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| maf_file | File | ||
| ref_fasta | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| maf2vcf |
maf2vcf.cwl
(CommandLineTool)
|
||
| zip_vcf |
bgzip.cwl
(CommandLineTool)
|
||
| sort_vcf |
vcf_sort.cwl
(CommandLineTool)
|
||
| index_vcf |
index_vcf.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_file | File |
Permalink:
https://w3id.org/cwl/view/git/ba3ff09328cc646d7254b2d2ee0fbe1abca3d4ad/cwl/maf2vcf_gz_workflow.cwl
