Workflow: tmb_workflow.cwl

Fetched 2026-02-03 11:38:00 GMT

Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file

children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
pairs https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/types.yml#TMBOutputPair[]
assay_coverage String

genome_coverage value; amount of the genome in bp covered by the assay

Steps

ID Runs Label Doc
run_tmb_workflow

Outputs

ID Type Label Doc
pairs https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/types.yml#TMBOutputPair[]
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/tmb_workflow.cwl