Workflow: msi_workflow.cwl

Fetched 2026-02-09 19:51:11 GMT

Workflow to run the MSI analysis on a batch of samples

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Workflow as SVG
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Inputs

ID Type Title Doc
pairs https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/types.yml#MSIInputPair[]
threads String
tumor_bam_files File[]
normal_bam_files File[]
microsatellites_file File

reference microsatellite list

Steps

ID Runs Label Doc
run_msi_add_sample_id

Outputs

ID Type Label Doc
pairs https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/types.yml#MSIInputPair[]
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/2e1a01a788126f2901ffecc92a48fcbcb81776e1/cwl/msi_workflow.cwl