Workflow: pipeline.cwl
Fetched 2023-01-14 08:33:54 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bin_width | Integer |
width of each bin in basepairs along the graph vector |
|
| pangenome | File | ||
| cells_per_file | Integer |
Cells per file on component_segmentation |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bin_paths |
tools/odgi/odgi_bin.cwl
(CommandLineTool)
|
odgi bin |
binning of path information in the graph |
| sort_paths |
tools/odgi/odgi_sort.cwl
(CommandLineTool)
|
odgi sort |
variation graph sorts |
| index_paths |
tools/odgi/odgi_pathindex.cwl
(CommandLineTool)
|
odgi pathindex |
create a path index for a given graph |
| segment_components |
tools/graph-genome-segmentation/component_segmentation.cwl
(CommandLineTool)
|
||
| build_sparse_matrix_graph |
tools/odgi/odgi_build.cwl
(CommandLineTool)
|
odgi build |
construct a dynamic succinct variation graph |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| indexed_paths | File | ||
| colinear_components | File |
Permalink:
https://w3id.org/cwl/view/git/411155e8c1ff3a4b09d965eeb57a37f56690292b/pipeline.cwl
