Workflow: FastQC parallel and MultiQC
Fetched 2023-01-13 12:50:40 GMT
Verified with cwltool version 3.1.20221201130942
This CWL scatters FastQC quality control over multiple processors, one for each file and creates the MultiQC report version: 0.01
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq | File[] | ||
| outdir | String (Optional) | ||
| threads | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| fastqc |
fastqc-wf.cwl
(Workflow)
|
FastQC parallel |
This CWL scatters FastQC quality control over multiple processors, one for each file. version: 0.11.9 |
| multiqc |
../tools/multiqc.cwl
(CommandLineTool)
|
MultiQC quality control |
This CWL executes the established MultiQC pipeline across multiple fastqc files to generate a single quality control report. version: 0.01 |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| fastqc_zip | File[] | ||
| fastqc_html | File[] | ||
| multiqc_zip | File | ||
| multiqc_html | File |
Permalink:
https://w3id.org/cwl/view/git/6a1a6b9d5a152e783fe3f794ccce35387d02fd0d/CWL/workflows/qc-wf.cwl
