Workflow: Process cnvkit outputs
Fetched 2023-08-23 13:59:34 GMT
Verified with cwltool version 3.1.20230201224320
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- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| genome | String | ||
| all_genes | File | ||
| fixed_cnr | File[] | ||
| segmented | File[] | ||
| target_genes | File | ||
| target_coverage | File[] | ||
| reference_coverage | File | ||
| antitarget_coverage | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gene_overlap |
../tools/gene_overlap.cwl
(CommandLineTool)
|
Get gene overlaps | |
| process_outs |
../tools/process_cnvkit_results.cwl
(CommandLineTool)
|
Process results |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| gene_overlap | File | ||
| segmented_cov | File[] | ||
| segmented_beds | File[] |
Permalink:
https://w3id.org/cwl/view/git/afa90537a1d7465aba5fda486d004ced7a805030/subworkflows/process_cnvkit_results.cwl
