Workflow: hi-c-processing-parta-juicer.cwl
Fetched 2023-01-10 11:54:40 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq1 | File | ||
| fastq2 | File | ||
| ncores | Integer (Optional) | ||
| nsplit | Integer (Optional) | ||
| chrsizes | File (Optional) | ||
| bwa_index | File | ||
| max_remove_mapq | Integer (Optional) | ||
| reference_fasta | File (Optional) | ||
| restriction_file | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| juicer |
juicer.cwl
(CommandLineTool)
|
||
| juicer2pairs |
juicer2pairs.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out_pairs | File (Optional) | ||
| merged_nodups | File (Optional) | ||
| out_pairs_index | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/895a101d06c26f8c7f8a63545b2b74921b5f7526/cwl_awsem_v1/hi-c-processing-parta-juicer.cwl
