Workflow: genome_scanner.cwl
Fetched 2023-01-13 06:49:13 GMT
Verified with cwltool version 3.1.20221201130942
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| sequences | File | ||
| covariance_model_database | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| chunk |
../tools/esl-chunk.cwl
(CommandLineTool)
|
Chunk a sequence file using esl-ssplit |
https://github.com/EddyRivasLab/bio-easel |
| seqstat |
../tools/esl-seqstat.cwl
(CommandLineTool)
|
index a sequence file for use by esl-sfetch |
https://github.com/EddyRivasLab/easel |
| cmsearch |
../tools/cmsearch.cwl
(CommandLineTool)
|
search sequence(s) against a covariance model database |
http://eddylab.org/infernal/Userguide.pdf |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| chunked_sequence | File[] | ||
| cmsearch_matches | File[] |
Permalink:
https://w3id.org/cwl/view/git/76490cb7bade2e74087cb61a37a58891bfc16eb9/cwl/workflows/genome_scanner.cwl
