Workflow: Unaligned to aligned BAM

Fetched 2022-10-03 03:41:08 GMT
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Workflow as SVG
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  • Default Values
  • Nested Workflows
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  • Inputs/Outputs

Inputs

ID Type Title Doc
bam File
readgroup String
reference String

Steps

ID Runs Label Doc
align_and_tag
exome_alignment_packed.cwl#align_and_tag.cwl (CommandLineTool)
align with bwa_mem and tag
revert_to_fastq
exome_alignment_packed.cwl#revert_to_fastq.cwl (CommandLineTool)
revert to fastq

Outputs

ID Type Label Doc
tagged_bam File
Permalink: https://w3id.org/cwl/view/git/0ae2468ab2ba0b9a196c2aa89b580555750bf0f6/workflows/hello/exome_alignment_packed.cwl?part=align.cwl