Workflow: process VCF workflow

Fetched 2021-10-27 04:33:55 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
vcf File

Steps

ID Runs Label Doc
bgzip
../tools/bgzip.cwl (CommandLineTool)
bgzip VCF
index
../tools/index_vcf.cwl (CommandLineTool)
vcf index
add_gt
../tools/add_strelka_gt.cwl (CommandLineTool)
add GT tags

Outputs

ID Type Label Doc
processed_vcf File
Permalink: https://w3id.org/cwl/view/git/336f7d1af649f42543baa6be2594cd872919b5b5/definitions/subworkflows/strelka_process_vcf.cwl