Workflow: Per-region pindel
Fetched 2023-01-14 18:47:18 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reference | String | ||
| tumor_bam | File | ||
| normal_bam | File | ||
| insert_size | Integer | ||
| region_file | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| cat |
../tools/cat_out.cwl
(CommandLineTool)
|
||
| pindel |
../tools/pindel.cwl
(CommandLineTool)
|
pindel v0.2.5b8 |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| per_region_pindel_out | File |
Permalink:
https://w3id.org/cwl/view/git/1a908acc8059c2381ed146c6be1668f4bf1cfa73/definitions/subworkflows/pindel_cat.cwl
