Workflow: GSC Paired Jobs
Fetched 2023-01-09 04:46:45 GMT
Verified with cwltool version 3.1.20221201130942
Serial combination of KnowEnG tools
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| taxon | String | Subnetwork Species ID |
the taxonomic id for the species of interest |
| genomic_file | File | Genomic Spreadsheet File |
spreadsheet of genomic data with samples as columns and genes as rows |
| pg_edge_type | String | Subnetwork Edge Type |
the edge type keyword for the subnetwork of interest |
| gg_network_file | File | GG Network File |
gene-gene network of interactions in edge format |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gsc_drawr |
gsc_runner.cwl
(CommandLineTool)
|
Gene Set Characterization |
Network-guided gene set characterization method implementation by KnowEnG that relates public gene sets to user gene sets |
| pgkn_fetch |
knf_runner.cwl
(CommandLineTool)
|
Knowledge Network Fetcher |
Retrieve appropriate subnetwork from KnowEnG Knowledge Network from AWS S3 storage |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| gsc_drawr_out | File | ||
| pgkn_fetch_out | File |
Permalink:
https://w3id.org/cwl/view/git/8ca52a8d2b76d91b7618032a22699c5be7d12c6c/code/workflow.gsc.cwl
