Workflow: CWL-Blast.cwl
Fetched 2024-11-30 08:50:17 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Requires:
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| script1 | File | ||
| script2 | File | ||
| script3 | File | ||
| blastn_db | Directory | ||
| fasta_file | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step1 |
blast.cwl
(CommandLineTool)
|
||
| step2 |
extract_headers.cwl
(CommandLineTool)
|
||
| step3 |
count_nucleotides.cwl
(CommandLineTool)
|
||
| step4 |
extract_contigs.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| Blastn_file | File | ||
| Headers_txt | File | ||
| NucleoCount_txt | File | ||
| Extracted_contigs_txt | File |
Permalink:
https://w3id.org/cwl/view/git/6ce4a66ad8847f3214e3ec50194c2dc202e23109/CWL-Blast/CWL-Blast.cwl
