- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
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source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
input_mrna | File | ||
input_tree | File | ||
input_mirna | File | ||
input_coords | File[] | ||
output_file_name | String | ||
settings_split_by | String | ||
input_model_with_bls | File | ||
settings_contextLen_L | Integer | ||
settings_contextLen_U | Integer | ||
input_model_without_bls | File | ||
settings_mirza_threshold | Float | ||
input_multiple_alignments | File | ||
settings_index_after_split | Integer |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
calculate_mirza |
calculate_MIRZA.cwl
(CommandLineTool)
|
Calculate MIRZA interaction energy and MIRZA-based Branch Length Score (conservation) for the provided coordinates of putative targets. |
|
calculate_flanks |
calculate_flanks_composition.cwl
(CommandLineTool)
|
Calculate flanks composition using provided coordinates. |
|
calculate_distance |
calculate_distance.cwl
(CommandLineTool)
|
Calculate distance to the boundary based on provided coordinates for targets. |
|
concatenate_results |
concatenate.cwl
(CommandLineTool)
|
||
calculate_contrafold |
calculate_contrafold.cwl
(CommandLineTool)
|
The `CONTRAfold <http://contra.stanford.edu/contrafold/>`_ algorithm is used to calculate accessibility of target site for miRNA. |
|
merge_results_add_probability_and_calculate_per_gene_score |
merge_results_add_probability_and_calculate_per_gene_score.cwl
(CommandLineTool)
|
Merge all results into one features table |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output | File |
Permalink:
https://w3id.org/cwl/view/git/b4a38d00a8d6e27540217ac5d590ab8a5da0a92e/tools/analysis.cwl