Workflow: SPRM pipeline
Fetched 2023-01-10 22:58:29 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| mask_dir | Directory | Directory containing mask files | |
| image_dir | Directory | Directory containing image files | |
| options_file | File (Optional) | SPRM options file | |
| enable_manhole | Boolean (Optional) | Whether to enable remote debugging via 'manhole' |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| sprm |
steps/sprm.cwl
(CommandLineTool)
|
SPRM analysis |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sprm_output | Directory | SPRM output |
Permalink:
https://w3id.org/cwl/view/git/4ec0294484610b3f7811bc4f64773ac3833b8b8a/pipeline.cwl
