Workflow: psortedDefaultParams.cwl
Fetched 2023-03-19 18:41:58 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| exp_dir | Directory |
Converted experiment with converted codebook from prior step. |
|
| aux_names | String[] (Optional) |
list of the aux view names. Assumed none if blank. |
|
| channel_count | Integer (Optional) |
the number of channel expected for this experiment. |
|
| parameter_json | File (Optional) |
Json containing information for the dataset |
|
| cache_read_order | String[] (Optional) |
Cache read order for files. Will strip any CH dimensions. |
|
| aux_cache_read_order | String[] (Optional) |
Cache read order for aux views. Will strip any CH dimensions. |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| read_schema |
69f4f3b14f39a914e207627366d2b0fc
(CommandLineTool)
|
||
| stage_defaults |
inputParser.cwl
(ExpressionTool)
|
||
| execute_defaults |
be20d4ea736e6a3082a4d369c8950c8c
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| codebook | File | ||
| aux_names | String[] (Optional) |
list of the aux view names. Assumed none if blank. |
|
| file_vars | String[] | ||
| fov_count | Integer | ||
| fov_offset | Integer | ||
| file_format | String | ||
| round_count | Integer | ||
| round_offset | Integer | ||
| zplane_count | Integer | ||
| aux_file_vars | String[] | ||
| channel_count | Integer (Optional) |
the number of channel expected for this experiment. |
|
| zplane_offset | Integer | ||
| channel_offset | Integer | ||
| aux_file_formats | String[] | ||
| cache_read_order | String[] (Optional) |
Cache read order for files. Will strip any CH dimensions. |
|
| aux_channel_count | Integer[] | ||
| aux_channel_slope | String[] | ||
| aux_cache_read_order | String[] (Optional) |
Cache read order for aux views. Will strip any CH dimensions. |
|
| aux_channel_intercept | String[] |
Permalink:
https://w3id.org/cwl/view/git/03b8da4ede3afcbf97b4e780c153155f33e76c84/steps/psortedDefaultParams.cwl
