Workflow: create_snap_and_analyze.cwl
Fetched 2024-09-21 19:41:27 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| threads | Integer (Optional) | ||
| promoters | File (Optional) | ||
| gene_track | File (Optional) | ||
| size_index | File (Optional) | ||
| tmp_folder | String (Optional) | ||
| genome_name | String (Optional) | ||
| bin_size_list | Integer[] (Optional) | ||
| blacklist_bed | File (Optional) | ||
| alignment_index | File (Optional) | ||
| gene_annotation | File (Optional) | ||
| encode_blacklist | File (Optional) | ||
| preferred_barcodes | File (Optional) | ||
| sequence_directory | Directory | ||
| reference_genome_fasta | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| create_and_analyze_snap_file |
steps/snaptools_create_snap_file.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bam_file | File[] | ||
| snap_file | File[] | ||
| report_files | 9e02c91207b8a31db571b6a7c5eda54c[] | ||
| snap_qc_file | File[] | ||
| zipped_files | 9e08e52b11674845664b4662f0e0e07f[] | ||
| fragment_file | File[] | ||
| motif_CSV_files | 9d3704717a495a016fc0eac5feb40dc6[] | ||
| motif_RData_file | File[] | ||
| analysis_BED_files | ce978f6e674050b02b6b344a7db20f34[] | ||
| analysis_CSV_files | 8e47a98fea791ec27c4a454be387fa7f[] | ||
| analysis_MTX_files | 7136a7c797a2d2df55a95013ca6c8a8e[] | ||
| analysis_PDF_files | c641de3f829d264bb1930ba12d21b29f[] | ||
| analysis_TXT_files | 75ddf72e9fcbd130d3c1abe28402e43a[] | ||
| alignment_qc_report | File[] | ||
| analysis_HDF5_files | 0f266093811d847c08afc3fb735adc31[] | ||
| analysis_RDS_objects | 224ce3ea3d6172f04ece4489590b3521[] |
Permalink:
https://w3id.org/cwl/view/git/bb023f95ca3330128bfef41cc719ffcb2ee6a190/create_snap_and_analyze.cwl
