Workflow: bulk_process.cwl

Fetched 2023-01-04 20:58:24 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
if_sort String (Optional)
threads Integer (Optional)
num_cores Integer (Optional)
size_index File (Optional)
tmp_folder String (Optional)
genome_name String (Optional)
input_fastq1 File
input_fastq2 File
blacklist_bed File (Optional)
alignment_index File (Optional)
reference_genome_fasta File (Optional)

Steps

There are no steps in this workflow

Outputs

ID Type Label Doc
bam_file File
report_files File[]
zipped_files File[]
alignment_qc_report File
Permalink: https://w3id.org/cwl/view/git/6aad6cf080303e682e5f965f86ddd3c6534ad4a3/steps/bulk_process.cwl