Workflow: bulk_process.cwl
Fetched 2025-10-25 22:53:55 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| if_sort | String (Optional) | ||
| threads | Integer (Optional) | ||
| size_index | File (Optional) | ||
| tmp_folder | String (Optional) | ||
| genome_name | String (Optional) | ||
| input_fastq1 | File | ||
| input_fastq2 | File | ||
| alignment_index | File (Optional) | ||
| encode_blacklist | File (Optional) | ||
| reference_genome_fasta | File (Optional) |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bam_file | File | ||
| alignment_qc_report | File |
Permalink:
https://w3id.org/cwl/view/git/102d8cb180bb201d6ef054531a84a764a06c8622/steps/bulk_process.cwl
