Workflow: pipeline.cwl
Fetched 2025-09-16 03:22:33 GMT
Verified with cwltool version 3.1.20230201224320
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Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| organism | String (Optional) | ||
| secondary_analysis_matrix | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| pan_organ_azimuth |
steps/pan-organ-azimuth.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| umap_plot | File (Optional) | UMAP dimensionality reduction plot colored by cell type | |
| spatial_plot | File (Optional) | Spatial plot colored by cell type | |
| cell_type_manifest | File (Optional) | ||
| marker_gene_plot_t_test | File (Optional) | Cell type marker genes, t-test | |
| calculated_metadata_file | File (Optional) | ||
| neighborhood_enrichment_plot | File (Optional) | ||
| annotated_secondary_analysis_matrix | File |
Permalink:
https://w3id.org/cwl/view/git/983f341ae3904fab83427492d85f08b64b5197d2/pipeline.cwl
