Workflow: annotate.cwl
Fetched 2026-06-23 22:50:34 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| organ | String | ||
| matrix | File | ||
| algorithm |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| qc |
../containers/qc/pipeline.cwl
(CommandLineTool)
|
||
| popv |
../containers/popv/pipeline.cwl
(CommandLineTool)
|
||
| azimuth |
../containers/azimuth/pipeline.cwl
(CommandLineTool)
|
||
| frmatch |
../containers/frmatch/pipeline.cwl
(CommandLineTool)
|
||
| celltypist |
../containers/celltypist/pipeline.cwl
(CommandLineTool)
|
||
| pan-human-azimuth |
../containers/pan-human-azimuth/pipeline.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| report | File | ||
| qc_results | Directory | ||
| annotated_matrix | File |
Permalink:
https://w3id.org/cwl/view/git/9b4890c0f4d48124c21dd72a230bee65e7169c51/steps/annotate.cwl
