Workflow: run-one.cwl
Fetched 2025-09-06 18:53:52 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| organ | String | ||
| matrix | File | ||
| algorithm |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| collect |
collect-files.cwl
(ExpressionTool)
|
||
| annotate |
annotate.cwl
(Workflow)
|
||
| nsforest |
../containers/nsforest/pipeline.cwl
(CommandLineTool)
|
||
| crosswalk |
../containers/crosswalking/pipeline.cwl
(CommandLineTool)
|
||
| summarize |
../containers/extract-summary/pipeline.cwl
(CommandLineTool)
|
||
| check_result |
check_annotation_report.cwl
(ExpressionTool)
|
||
| selectReport |
29dcd7d8d3fd7c37f712aa9d7f147354
(ExpressionTool)
|
||
| gene_expression |
../containers/gene-expression/pipeline.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| directory | Directory |
Permalink:
https://w3id.org/cwl/view/git/66df9a253dce61b8827cf75ab7eacd16786c0b41/steps/run-one.cwl
