Workflow: fastq2fasta-create-bwaindex.cwl

Fetched 2021-02-05 01:34:18 GMT
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Inputs

ID Type Title Doc
threads Integer
ref_fasta File
fastq_forward File
fastq_reverse File (Optional)

Steps

ID Runs Label Doc
bwa-index
bwa-index.cwl (CommandLineTool)

string

fastq2fasta
fastq2fasta.cwl (Workflow)
samtools-faidx
samtools-faidx.cwl (CommandLineTool)

samtools sort, sort given bam file

Outputs

ID Type Label Doc
out_fasta File
Permalink: https://w3id.org/cwl/view/git/24465ba219711f2828e633d25d9f183e0f0eaccd/cwl/fastq2fasta/fastq2fasta-create-bwaindex.cwl