Workflow: pangenome-generate.cwl
Fetched 2023-01-04 22:54:54 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| metadata | File[] | ||
| subjects | String[] | ||
| inputReads | File[] | ||
| metadataSchema | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| dedup |
seqkit-rmdup.cwl
(CommandLineTool)
|
||
| odgi2rdf |
odgi_to_rdf.cwl
(CommandLineTool)
|
||
| vizGraph |
odgi-viz.cwl
(CommandLineTool)
|
||
| buildGraph |
odgi-build.cwl
(CommandLineTool)
|
||
| induceGraph |
seqwish.cwl
(CommandLineTool)
|
||
| overlapReads |
minimap2.cwl
(CommandLineTool)
|
||
| mergeMetadata |
merge-metadata.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| odgiPNG | File | ||
| odgiRDF | File | ||
| odgiGraph | File | ||
| seqwishGFA | File | ||
| mergedMetadata | File |
Permalink:
https://w3id.org/cwl/view/git/1b1139d72e1bcc870424c87c7325e27ed79bc42c/cwl/pangenome-generate/pangenome-generate.cwl
