Workflow: process VCF workflow
Fetched 2024-05-21 06:31:35 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| vcf | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bgzip |
../detect_variants/bgzip.cwl
(CommandLineTool)
|
bgzip VCF | |
| index |
../detect_variants/index_vcf.cwl
(CommandLineTool)
|
vcf index | |
| add_gt |
add_gt.cwl
(CommandLineTool)
|
add GT tags |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| processed_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/d1ee6a2a323cee7e4af00c7e0b926c2192038e1d/strelka/process_vcf.cwl
