Workflow: cram_to_bam workflow

Fetched 2023-01-04 02:43:55 GMT
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Workflow as SVG
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  • Inputs/Outputs

Inputs

ID Type Title Doc
cram File
reference String

Steps

ID Runs Label Doc
index_bam
../detect_variants/index_bam.cwl (CommandLineTool)
samtools index
cram_to_bam
cram_to_bam.cwl (CommandLineTool)
samtools view cram to bam

Outputs

ID Type Label Doc
bam File
Permalink: https://w3id.org/cwl/view/git/ab3cc1f460146c60d7de417508f0c1ea70506e6a/cram_to_bam/workflow.cwl