Workflow: Per-chromosome pindel
Fetched 2023-01-12 00:32:51 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reference | File | ||
| tumor_bam | File | ||
| chromosome | String | ||
| normal_bam | File | ||
| insert_size | Integer | ||
| tumor_bam_index | File | ||
| normal_bam_index | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| cat |
cat_out.cwl
(CommandLineTool)
|
||
| pindel |
pindel.cwl
(CommandLineTool)
|
pindel v0.2.5b8 |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| per_chromosome_pindel_out | File |
Permalink:
https://w3id.org/cwl/view/git/202b43b7449485a317c857d62ca7d39196764e65/pindel/pindel_cat.cwl
