Workflow: Per-region pindel
Fetched 2024-11-23 19:05:02 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reference | File | ||
| tumor_bam | File | ||
| normal_bam | File | ||
| insert_size | Integer | ||
| region_file | File | ||
| tumor_sample_name | String | ||
| normal_sample_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| cat |
../tools/cat_out.cwl
(CommandLineTool)
|
||
| pindel |
../tools/pindel.cwl
(CommandLineTool)
|
pindel v0.2.5b8 |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| per_region_pindel_out | File |
Permalink:
https://w3id.org/cwl/view/git/5fda2d9eb52a363bd51011b3851c2afb86318c0c/definitions/subworkflows/pindel_cat.cwl
