- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam | File | ||
dbsnp_vcf | File (Optional) | ||
intervals | cf40a116d7fb3e2fbaa2d644140cc2eb[] | ||
reference | String | ||
gvcf_gq_bands | String[] | ||
contamination_fraction | String (Optional) | ||
emit_reference_confidence | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
haplotype_caller |
../tools/gatk_haplotype_caller.cwl
(CommandLineTool)
|
GATK HaplotypeCaller |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
gvcf | File[] |
Permalink:
https://w3id.org/cwl/view/git/f9600f9959acdc30259ba7e64de61104c9b01f0b/definitions/subworkflows/gatk_haplotypecaller_iterator.cwl