- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
vcf | File | ||
sv_intervals | https://w3id.org/cwl/view/git/f9600f9959acdc30259ba7e64de61104c9b01f0b/definitions/types/labelled_file.yml#labelled_file[] | ||
maximum_sv_population_frequency | Float |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
filter_sv_pop |
../tools/filter_vcf_max_sv_pop_freq.cwl
(CommandLineTool)
|
POPFREQ_AF filter | |
interval_to_bed |
../tools/intervals_to_bed.cwl
(CommandLineTool)
|
||
intersect_variants |
../tools/bedtools_intersect.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
filtered_vcf | File[] | ||
sv_pop_filtered_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/f9600f9959acdc30259ba7e64de61104c9b01f0b/definitions/subworkflows/filter_sv_vcf.cwl