Workflow: Unaligned to aligned BAM
Fetched 2026-09-13 15:38:37 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| readgroup | String | ||
| reference | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| align_and_tag |
../tools/align_and_tag.cwl
(CommandLineTool)
|
align with bwa_mem and tag |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| tagged_bam | File |
Permalink:
https://w3id.org/cwl/view/git/f7ac3eff79128831c9f7a565d5b187882f39aa58/definitions/subworkflows/align.cwl
