- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
reference | String | ||
tumor_bam | File | ||
chromosome | String | ||
normal_bam | File | ||
insert_size | Integer |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
cat |
../tools/cat_out.cwl
(CommandLineTool)
|
||
pindel |
../tools/pindel.cwl
(CommandLineTool)
|
pindel v0.2.5b8 |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
per_chromosome_pindel_out | File |
Permalink:
https://w3id.org/cwl/view/git/f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a/definitions/subworkflows/pindel_cat.cwl