Workflow: Per-region pindel

Fetched 2021-10-27 04:40:44 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
reference File
normal_bam File
normal_sample_name String
tumor_bam File
insert_size Integer
tumor_sample_name String
region_file File

Steps

ID Runs Label Doc
cat
../tools/cat_out.cwl (CommandLineTool)
pindel
../tools/pindel.cwl (CommandLineTool)
pindel v0.2.5b8

Outputs

ID Type Label Doc
per_region_pindel_out File
Permalink: https://w3id.org/cwl/view/git/ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f/definitions/subworkflows/pindel_cat.cwl