Workflow: Per-region pindel

Fetched 2023-01-05 07:09:15 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
reference File
tumor_bam File
normal_bam File
insert_size Integer
region_file File
tumor_sample_name String
normal_sample_name String

Steps

ID Runs Label Doc
cat
../tools/cat_out.cwl (CommandLineTool)
pindel
../tools/pindel.cwl (CommandLineTool)
pindel v0.2.5b8

Outputs

ID Type Label Doc
per_region_pindel_out File
Permalink: https://w3id.org/cwl/view/git/d3e4bf55753cd92f97537c7d701187ea92d1e5f0/definitions/subworkflows/pindel_cat.cwl