Workflow: mutect parallel workflow

Fetched 2023-01-04 10:43:09 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
reference File
tumor_bam File
normal_bam File (Optional)
interval_list File
scatter_count Integer
tumor_sample_name String

Steps

ID Runs Label Doc
index
../tools/index_vcf.cwl (CommandLineTool)
vcf index
merge
../tools/merge_vcf.cwl (CommandLineTool)
vcf merge
filter
fp_filter.cwl (Workflow)
fp_filter workflow
mutect
../tools/mutect.cwl (CommandLineTool)
Mutect2 (GATK 4)
split_interval_list
../tools/split_interval_list.cwl (CommandLineTool)

Outputs

ID Type Label Doc
filtered_vcf File
unfiltered_vcf File
Permalink: https://w3id.org/cwl/view/git/d3e4bf55753cd92f97537c7d701187ea92d1e5f0/definitions/subworkflows/mutect.cwl