- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
vcf | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
bgzip |
../tools/bgzip.cwl
(CommandLineTool)
|
bgzip VCF | |
index |
../tools/index_vcf.cwl
(CommandLineTool)
|
vcf index | |
add_gt |
../tools/add_strelka_gt.cwl
(CommandLineTool)
|
add GT tags |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
processed_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/b9e7392e72506cadd898a6ac4db330baf6535ab6/definitions/subworkflows/strelka_process_vcf.cwl