- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
vcf | File | ||
data_type | |||
sample_name | String | ||
snv_bam_readcount_tsv | File | ||
indel_bam_readcount_tsv | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
add_snv_bam_readcount_to_vcf |
../tools/vcf_readcount_annotator.cwl
(CommandLineTool)
|
add bam_readcount info to vcf | |
add_indel_bam_readcount_to_vcf |
../tools/vcf_readcount_annotator.cwl
(CommandLineTool)
|
add bam_readcount info to vcf |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
annotated_bam_readcount_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e/definitions/subworkflows/vcf_readcount_annotator.cwl