Workflow: Unaligned to aligned BAM

Fetched 2023-01-04 19:28:38 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
bam File
readgroup String
reference File

Steps

ID Runs Label Doc
align_and_tag
../tools/align_and_tag.cwl (CommandLineTool)
align with bwa_mem and tag

Outputs

ID Type Label Doc
tagged_bam File
Permalink: https://w3id.org/cwl/view/git/97572e3a088d79f6a4166385f79e79ea77b11470/definitions/subworkflows/align.cwl