- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
chemistry | String (Optional) | ||
reference | Directory | ||
sample_name | String | ||
bcl_directory | Directory | ||
simple_sample_csv | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
count |
../tools/cellranger_count.cwl
(CommandLineTool)
|
Run Cell Ranger Count | |
mkfastq |
../tools/cellranger_mkfastq.cwl
(CommandLineTool)
|
Run Cell Ranger mkfastq |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
fastqs | Directory | ||
samplesheet | File | ||
counts_out_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/6949082038c1ad36d6e9848b97a2537aef2d3805/definitions/subworkflows/cellranger_mkfastq_and_count.cwl