Workflow: downsample unaligned BAM and align

Fetched 2023-01-04 20:58:44 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
bams File[]
mills File
dbsnp_vcf File
reference String
readgroups String[]
known_indels File
downsample_probability Float

Steps

ID Runs Label Doc
downsample
../tools/downsample.cwl (CommandLineTool)
downsample unaligned BAM
align_workflow
bam_to_bqsr.cwl (Workflow)
Unaligned BAM to BQSR

Outputs

ID Type Label Doc
bam File
mark_duplicates_metrics_file File
Permalink: https://w3id.org/cwl/view/git/54846feabbf008c1946db2a86d87252e0edd95b0/definitions/subworkflows/downsampled_alignment.cwl