- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam | File | ||
readgroup | String | ||
reference | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
align_and_tag |
../tools/align_and_tag.cwl
(CommandLineTool)
|
align with bwa_mem and tag |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
tagged_bam | File |
Permalink:
https://w3id.org/cwl/view/git/480c438a6a7e78c624712aec01bc4214d2bc179c/definitions/subworkflows/align.cwl