Workflow: Add snv and indel bam-readcount files to a vcf

Fetched 2021-01-23 23:16:28 GMT
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Inputs

ID Type Title Doc
vcf File
data_type
sample_name String
snv_bam_readcount_tsv File
indel_bam_readcount_tsv File

Steps

ID Runs Label Doc
add_snv_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf
add_indel_bam_readcount_to_vcf
../tools/vcf_readcount_annotator.cwl (CommandLineTool)
add bam_readcount info to vcf

Outputs

ID Type Label Doc
annotated_bam_readcount_vcf File
Permalink: https://w3id.org/cwl/view/git/3a287b7cb6162cdea79865235d224fea45963d87/definitions/subworkflows/vcf_readcount_annotator.cwl